ErmineJ now requires Java 8 Updated external URLs for GO terms Multi-gene-mapping microarray probes listed in Gemma platform annotation files are now ignored by default. This behaviour can be modified through a configuration. Changes for compatibility with the new Gemma RESTful API Mac OS distribution now a DMG file.
This release fixes several problems reported by users as well as including some documentation updates. The “generic” distribution of the software had an error in the configuration causing it to fail to execute. The logging configuration was causing some problems for command line use. In the details screen, if your “raw data” matrix is missing […]
This release fixes several issues: Quicklists did not correctly deal with genes in your hitlist that are unannotated (are not members of any gene groups). Error handling for the “multifunctionality diagnostics” has been improved. Problems with selecting score files and poor interaction with the file validation in the Analysis Wizard (bug 3874) The ermineJ log […]
Version 3.0 – (June 2013) Many major and minor new features, numerous bug fixes, and major code rewrites. Note that this version of ErmineJ is not completely backwards-compatible with previous versions. Your old results files may not load properly, and old settings (erminej.properties) may not be read in completely. Also not that version 3.x files […]
Version 2.1.22 – (November 2010) Changes include: Fix CLI bug that caused gene score file to be required even when using the correlation method. Version 2.1.21 – (September 2010) Changes include: Update our GO parser to correctly handle the revised GO hierarchy structure. This only affects the view of GO in the “Tree view”. Thanks […]