Version 3.1 (February 2018)

This update mostly affects the command line interface (CLI), but has some impact on the GUI. This includes removing some rarely-used methods, changing some defaults, and renaming some options. This may break (or change the output of) existing scripts using the CLI which is why we have bumped the version number to 3.1. Changes include: […]

Powerful, flexible and simple gene set analysis.

ErmineJ performs analyses of gene sets in high-throughput genomics data such as gene expression profiling studies. A typical goal is to determine whether particular biological pathways are "doing something interesting" in an experiment that generates long lists of candidates. The software is designed to be used by biologists with little or no informatics background. ErmineJ is free software developed by the Pavlidis lab at the University of British Columbia.

ErmineJ can be downloaded here , or run ErmineJ right now using WebStart. The source is also available on GitHub.

Major features include: For more information see the user manual.