Version 3.0.3 (September 28 2017)

ErmineJ now requires Java 8 Updated external URLs for GO terms Multi-gene-mapping microarray probes listed in Gemma platform annotation files are now ignored by default. This behaviour can be modified through a configuration. Changes for compatibility with the new Gemma RESTful API Mac OS distribution now a DMG file.  

Powerful, flexible and simple gene set analysis.

ErmineJ performs analyses of gene sets in high-throughput genomics data such as gene expression profiling studies. A typical goal is to determine whether particular biological pathways are "doing something interesting" in an experiment that generates long lists of candidates. The software is designed to be used by biologists with little or no informatics background. ErmineJ is free software developed by the Pavlidis lab at the University of British Columbia.

ErmineJ can be downloaded here , or run ErmineJ right now using WebStart.

Major features include:

For more information see the user manual.