Version 3.1.1 (March 2018)

Changes in this version affect the behaviour of the software in a particular gene score situation, where the smallest value is the for the top gene. This is in contrast to the typical inputs which are p-values (for which -log10 transformation is conducted, so large values are ranked highest) or fold-changes or other scores that […]

Powerful, flexible and simple gene set analysis.

ErmineJ performs analyses of gene sets in high-throughput genomics data such as gene expression profiling studies. A typical goal is to determine whether particular biological pathways are "doing something interesting" in an experiment that generates long lists of candidates. The software is designed to be used by biologists with little or no informatics background. ErmineJ is free software developed by the Pavlidis lab at the University of British Columbia.

ErmineJ can be downloaded here , or run ErmineJ right now using WebStart. The source is also available on GitHub.

Major features include: For more information see the user manual.