ErmineJ documentation
This manual is organized into the following topics:
Software Installation Notes
Software Startup and Overview
Running an Analysis: General steps and ORA
Running an Analysis: Resampling
Running an Analysis: ROC
Running an Analysis: Correlation
Tutorial: Precision-Recall scoring
Analysis Results
Multifunctionality diagnostics
Saving and Loading Analyses and Projects
Manipulating Gene Sets
Multifunctionality
ErmineJ Tree View
Locating Gene Sets
Handling repeated genes
Multiple Test Correction in ermineJ
Tips: Speeding up Resampling
Explanation: Computing Gene Set Sizes
Explanation: Interpreting Gene Set Scores
ermineJ API
ermineJ CLI