Version 3.1.2 (May 2018)
This version adds support for the OBO file format for the Gene Ontology in addition to XML. In the future OBO is likely to be the recommended file type to use for ErmineJ. We are also taking this opportunity to announce the availability of R support for ErmineJ, with the ErmineR library.
Version 3.1.1 (March 2018)
Changes in this version affect the behaviour of the software in a particular gene score situation, where the smallest value is the for the top gene. This is in contrast to the typical inputs which are p-values (for which -log10 transformation is conducted, so large values are ranked highest) or fold-changes or other scores that […]
Version 3.1 (February 2018)
This update mostly affects the command line interface (CLI), but has some impact on the GUI. This includes removing some rarely-used methods, changing some defaults, and renaming some options. This may break (or change the output of) existing scripts using the CLI which is why we have bumped the version number to 3.1. Changes include: […]