Version 3.1.1 (March 2018)

Changes in this version affect the behaviour of the software in a particular gene score situation, where the smallest value is the for the top gene. This is in contrast to the typical inputs which are p-values (for which -log10 transformation is conducted, so large values are ranked highest) or fold-changes or other scores that lead to ranking genes in decreasing order (“bigger is better”). Specifically:

  • Fixes a bug in the precision-recall method that caused incorrect results when using such scores.
  • A related fix was made to the multifunctionality bias assessments when using such scores.
  • Fixes a bug in the display of score distributions in the gene set details window (GUI) when using such scores.